PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033943-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 132aa    MW: 14687.3 Da    PI: 8.5401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033943-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-081242448
                      HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                      W++Ia +++ gRt++++k++w+++l
  PSME_00033943-RA  1 WSLIAGRLP-GRTDNDIKNYWNSHL 24
                      *********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001679.23E-7124No hitNo description
PfamPF002491.9E-6124IPR001005SANT/Myb domain
SuperFamilySSF466894.73E-7130IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-12125IPR009057Homeodomain-like
PROSITE profilePS5129417.587128IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
WSLIAGRLPG RTDNDIKNYW NSHLKRKLIG MGIDPLTHRA FQKNSHHNPS APGNVRAPQT  60
ERWQGIVQDF FSCPSKLGVK SEQISDATSV QLEPDEHSSH LNLNLELSIT RSSIQAAGKE  120
VFNSEQGERG SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1171707e-79BT117170.1 Picea glauca clone GQ03814_D21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315890.25e-24hypothetical protein POPTR_0010s12420g
SwissprotQ9SZP11e-20MYB4_ARATH; Transcription repressor MYB4
TrEMBLA9NTK09e-53A9NTK0_PICSI; Putative uncharacterized protein
STRINGPOPTR_0010s12420.12e-23(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-20myb domain protein 4